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Documentation

  • Requesting An Account
  • Get Started
    • Quick Start
    • Common Terms
    • HPC Resources
    • Theory of HPC
      • Overview of threads, cores, and sockets in Slurm for HPC workflows
    • Git Guide
  • Get Help
    • Frequently Asked Questions
    • Troubleshooting
  • Cluster Specifications
    • Node Features (Constraints)
      • NVLink and NVSwitch
    • Node List
    • Partition List
      • Gypsum
    • Storage
  • Connecting to Unity
    • SSH
    • Unity OnDemand
    • Connecting to Desktop VS Code
  • Managing Files
    • Command Line Interface (CLI)
    • Disk Quotas
    • FileZilla
    • Globus
    • Scratch: HPC Workspace
    • Unity OnDemand File Browser
  • Submitting Jobs
    • Batch Jobs
      • Array Batch Jobs
      • Large Job Counts
      • Monitor a batch job
    • Helper Scripts
    • Interactive CLI Jobs
    • Unity OnDemand
    • Message Passing Interface (MPI)
    • Slurm cheat sheet
  • Software Management
    • Conda
    • Modules
      • Module Usage
    • Renv
    • Unity OnDemand
      • JupyterLab OnDemand
    • Venv
  • Tools & Software
    • ColabFold
    • R
      • R Parallelization
    • Unity GPUs
  • Datasets
    • AI and ML
      • Code Llama
      • Imagenet
      • Imagenet 1K
      • LAION
      • Llama2
      • mixtral
    • Bioinformatics
      • BFD/MGnify
      • Big Fantastic Database
      • ColabFoldDB
      • dfam
      • EggNOG
      • Kraken2
      • MGnify
      • NCBI BLAST databases
      • NCBI RefSeq database
      • PDB70
      • PDB70 for ColabFold
      • Protein Data Bank
      • Protein Data Bank database in mmCIF format
      • Protein Data Bank database in SEQRES records
      • Tara Oceans 18S amplicon
      • Tara Oceans MATOU gene catalog
      • Tara Oceans MGT transcriptomes
      • Uniclust30
      • UniProtKB
      • UniRef30
      • UniRef90
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dfam

Path:/datasets/bio/dfam/
URL:https://www.dfam.org/home
Downloaded:2023-03-20
Cite:Storer, J., Hubley, R., Rosen, J., & et al. (2021). The Dfam community resource of transposable element families, sequence models, and genome annotations. Mobile DNA, 12(2). https://doi.org/10.1186/s13100-020-00230-y
Bibtex:
@article{storer2021dfam, author = {Storer, J. and Hubley, R. and Rosen, J. and et al.}, title = {The Dfam community resource of transposable element families, sequence models, and genome annotations}, journal = {Mobile DNA}, volume = {12}, number = {2}, year = {2021}, doi = {10.1186/s13100-020-00230-y} }
Last modified: Wednesday, October 30, 2024 at 3:12 PM. See the commit on GitLab.
University of Massachusetts Amherst University of Massachusetts Amherst University of Rhode Island University of Rhode Island University of Massachusetts Dartmouth University of Massachusetts Dartmouth University of Massachusetts Lowell University of Massachusetts Lowell University of Massachusetts Boston University of Massachusetts Boston Mount Holyoke College Mount Holyoke College
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